{
  "_id": "6a1016c6acfb0bcc41c84ac5",
  "Package": "pmwg",
  "Title": "Particle Metropolis Within Gibbs",
  "Version": "0.2.7",
  "Authors@R": "c(\nperson(\"Gavin\", \"Cooper\", email = \"gavin@gavincooper.net\", role = c(\"aut\", \"cre\", \"trl\"), comment = \"Package creator and maintainer\"),\nperson(\"Reilly\", \"Innes\", email = \"Reilly.Innes@uon.edu.au\", role = c(\"aut\")),\nperson(\"Caroline\", \"Kuhne\", email = \"caroline.kuhne@newcastle.edu.au\", role = c(\"aut\")),\nperson(\"Jon-Paul\", \"Cavallaro\", email = \"jon-paul.cavallaro@uon.edu.au\", role = c(\"aut\")),\nperson(\"David\", \"Gunawan\", email = \"dgunawan@uow.edu.au\", role = c(\"aut\"), comment = \"Author of original MATLAB code\"),\nperson(\"Guy\", \"Hawkins\", email = \"guy.hawkins@newcastle.edu.au\", role = c(\"aut\")),\nperson(\"Scott\", \"Brown\", email = \"scott.brown@newcastle.edu.au\", role = c(\"aut\", \"trl\"), comment = \"Original translation from MATLAB to R\"),\nperson(\"Niek\", \"Stevenson\", email = \"niek.stevenson@gmail.com\", role = c(\"aut\")))",
  "Description": "Provides an R implementation of the Particle Metropolis\nwithin Gibbs sampler for model parameter, covariance matrix and\nrandom effect estimation. A more general implementation of the\nsampler based on the paper by Gunawan, D., Hawkins, G. E.,\nTran, M. N., Kohn, R., & Brown, S. D. (2020)\n<doi:10.1016/j.jmp.2020.102368>. An HTML tutorial document\ndescribing the package is available at\n<https://university-of-newcastle-research.github.io/samplerDoc/>\nand includes several detailed examples, some background and\ntroubleshooting steps.",
  "License": "GPL-3",
  "URL": "https://github.com/university-of-newcastle-research/pmwg",
  "BugReports": "https://github.com/university-of-newcastle-research/pmwg/issues",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "VignetteBuilder": "knitr",
  "Repository": "https://university-of-newcastle-research.r-universe.dev",
  "Date/Publication": "2024-02-01 01:31:41 UTC",
  "RemoteUrl": "https://github.com/university-of-newcastle-research/pmwg",
  "RemoteRef": "HEAD",
  "RemoteSha": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-14 06:19:48 UTC",
    "User": "root"
  },
  "Author": "Gavin Cooper [aut, cre, trl] (Package creator and maintainer),\nReilly Innes [aut],\nCaroline Kuhne [aut],\nJon-Paul Cavallaro [aut],\nDavid Gunawan [aut] (Author of original MATLAB code),\nGuy Hawkins [aut],\nScott Brown [aut, trl] (Original translation from MATLAB to R),\nNiek Stevenson [aut]",
  "Maintainer": "Gavin Cooper <gavin@gavincooper.net>",
  "MD5sum": "47fd7d3af118ac3a496bc71bfef5dee3",
  "_user": "university-of-newcastle-research",
  "_type": "src",
  "_file": "pmwg_0.2.7.tar.gz",
  "_fileid": "d4dabd5905d187ab48385ab5fa8dbedc755d407ab7e2865a46ed1ada8eeb2755",
  "_filesize": 567139,
  "_sha256": "d4dabd5905d187ab48385ab5fa8dbedc755d407ab7e2865a46ed1ada8eeb2755",
  "_created": "2026-05-14T06:19:48.000Z",
  "_published": "2026-05-22T08:41:42.006Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77345666018,
      "time": 133,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6988471951"
    },
    {
      "job": 77345665894,
      "time": 124,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988470308"
    },
    {
      "job": 77345665557,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6988472814"
    },
    {
      "job": 77345665909,
      "time": 117,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7010862890"
    },
    {
      "job": 77345665611,
      "time": 171,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988443726"
    },
    {
      "job": 77345665202,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7156387152"
    },
    {
      "job": 77345665939,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "6988465629"
    },
    {
      "job": 77345665947,
      "time": 79,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "6988460902"
    },
    {
      "job": 77345665960,
      "time": 77,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "6988460698"
    }
  ],
  "_buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/university-of-newcastle-research/pmwg",
  "_commit": {
    "id": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
    "author": "Gavin Cooper <phd@gavincooper.net>",
    "committer": "Gavin Cooper <phd@gavincooper.net>",
    "message": "Remove CRAN SUBMISSION due to github release minting\n",
    "time": 1706751101
  },
  "_maintainer": {
    "name": "Gavin Cooper",
    "email": "gavin@gavincooper.net"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "checkmate",
      "role": "Imports"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "condMVNorm",
      "role": "Imports"
    },
    {
      "package": "MASS",
      "role": "Imports"
    },
    {
      "package": "mvtnorm",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "covr",
      "role": "Suggests"
    },
    {
      "package": "rtdists",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "V8",
      "role": "Suggests"
    }
  ],
  "_owner": "university-of-newcastle-research",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 4,
  "_contributors": [
    {
      "user": "gjcooper",
      "count": 314,
      "uuid": 4734354
    },
    {
      "user": "reillyinnes",
      "count": 2,
      "uuid": 45774335
    },
    {
      "user": "niekstevenson",
      "count": 1,
      "uuid": 48476039
    }
  ],
  "_userbio": {
    "uuid": 101780312,
    "type": "organization",
    "name": "University of Newcastle - Research"
  },
  "_downloads": {
    "count": 246,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/pmwg"
  },
  "_devurl": "https://github.com/university-of-newcastle-research/pmwg",
  "_searchresults": 29,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/pmwg.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/university-of-newcastle-research/pmwg",
  "_realowner": "university-of-newcastle-research",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.9",
      "date": "2020-09-02"
    },
    {
      "version": "0.2.0",
      "date": "2021-02-17"
    },
    {
      "version": "0.2.7",
      "date": "2024-01-31"
    }
  ],
  "_exports": [
    "as_mcmc",
    "augment_sampler_epsilon",
    "init",
    "is.pmwgs",
    "pmwgs",
    "relabel_samples",
    "run_stage"
  ],
  "_datasets": [
    {
      "name": "forstmann",
      "title": "Forstmann et al.'s data",
      "object": "forstmann",
      "class": [
        "data.frame"
      ],
      "fields": [
        "subject",
        "condition",
        "stim",
        "resp",
        "rt"
      ],
      "rows": 15818,
      "table": true,
      "tojson": true
    },
    {
      "name": "sampled_forstmann",
      "title": "A sampled object of a model of the Forstmann dataset",
      "object": "sampled_forstmann",
      "class": [
        "pmwgs"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "as_mcmc",
      "title": "Return a CODA mcmc object with the required samples",
      "topics": [
        "as_mcmc"
      ]
    },
    {
      "page": "augment_sampler_epsilon",
      "title": "Augment existing sampler object to have subject specific epsilon storage",
      "topics": [
        "augment_sampler_epsilon"
      ]
    },
    {
      "page": "forstmann",
      "title": "Forstmann et al.'s data",
      "topics": [
        "forstmann"
      ]
    },
    {
      "page": "init",
      "title": "Initialise values for the random effects",
      "topics": [
        "init"
      ]
    },
    {
      "page": "is.pmwgs",
      "title": "Test whether object is a pmwgs",
      "topics": [
        "is.pmwgs"
      ]
    },
    {
      "page": "pmwgs",
      "title": "Create a PMwG sampler and return the created object",
      "topics": [
        "pmwgs"
      ]
    },
    {
      "page": "relabel_samples",
      "title": "Relabel requested burn-in samples as adaptation",
      "topics": [
        "relabel_samples"
      ]
    },
    {
      "page": "run_stage",
      "title": "Run a stage of the PMwG sampler",
      "topics": [
        "run_stage"
      ]
    },
    {
      "page": "sampled_forstmann",
      "title": "A sampled object of a model of the Forstmann dataset",
      "topics": [
        "sampled_forstmann"
      ]
    }
  ],
  "_readme": "https://github.com/university-of-newcastle-research/pmwg/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "checkmate",
    "coda",
    "condMVNorm",
    "lattice",
    "MASS",
    "mvtnorm"
  ],
  "_vignettes": [
    {
      "source": "pmwg.Rmd",
      "filename": "pmwg.html",
      "title": "Introduction to pmwg",
      "engine": "knitr::rmarkdown",
      "headings": [
        "The data",
        "The log-likelihood function",
        "Other necessary components",
        "Creating and running the sampler",
        "References"
      ],
      "created": "2021-02-17 05:35:49",
      "modified": "2024-01-29 01:58:37",
      "commits": 3
    }
  ],
  "_score": 5.064457989226918,
  "_indexed": true,
  "_nocasepkg": "pmwg",
  "_universes": [
    "university-of-newcastle-research"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.7",
      "date": "2026-05-14T06:22:07.000Z",
      "distro": "noble",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "21c789c74662d26d901a77fe3da53054bd10eff115c9deaf3c8e1439171fcf3a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2.7",
      "date": "2026-05-14T06:21:57.000Z",
      "distro": "noble",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "7d4aaec658e1a965b5e4b00a0effa518a624efda6ed6fd1f97bd99d0fe2c5e00",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.7",
      "date": "2026-05-14T06:22:15.000Z",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "34ad9a437bad8ff5a2f9e593598cbfcbac32767aab778c12b32f303c4450619c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2.7",
      "date": "2026-05-15T05:43:37.000Z",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "aedb611697517defeb7576bdd078485e67191a953f6ef5515e206a817aa69822",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.7",
      "date": "2026-05-14T06:21:26.000Z",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "47f02422fcde9c8b0c6bfd4acf24fb1edfbf3fb3cc61bae523b354a96341f1d7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.7",
      "date": "2026-05-14T06:21:06.000Z",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "478423153a944abe2a178456e52e1fc84bd76a56ecd27ff4e4cb715b1e9bf7bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2.7",
      "date": "2026-05-14T06:21:05.000Z",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "463b90c60659fd5dcf22531d3fb91d3d0525e7efb6f25bcfee60b732242bbdb7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.7",
      "date": "2026-05-22T08:41:25.000Z",
      "commit": "c69e141b92eacc3779034dd4ca2d19ad6fe602a4",
      "fileid": "9575df41a36b1eb141e8a9cfa3267529252b8e5e41c3b515af9d3f0d77fce59d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/university-of-newcastle-research/actions/runs/25845165037"
    }
  ]
}